SNP Profiles matching NA 286

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTAATTTTCCCCAAAACCGG
1._GC-01-101-5-18
CCAAGGTTTTAATTTTCCCCAAAACCGG
2._NA_286
CCAAGGTTTTAATT_CCCCAAAACCGG
3._GC-01-101-5-18
CCAAGGTTTTAATT_CCCCAAAACCGG
4._RUQ_801
_AAGGTT___TT____CCGG
5._RUQ_1587
_AAGGTT___TT____CCGG
6._NA_286
CCAAGGTTTTACTTTTCCCCAAAACCGG
7._RUQ_468
_AAGGTT___TT____CCGG
8._RUQ_897
_AACGTT___TT____CCGG
9._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
10._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
11._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
12._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
13._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
14._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
15._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
16._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
17._MARPER_38
CCAACGTT-AATT-CC-AAAG-GG
18._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
19._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
20._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
21._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
22._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
23._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
24._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
25._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
26._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
27._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
28._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
29._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
30._RUQ_877
_AACCTT___TT____CCGG
31._POUND_2_/A
CCAACCTTTTAATTTTCC_AAAGCCGG
32._POUND_25_/A
CCAACCTTTTAATTTTCC_AAAGCCGG
33._POUND_5_/C
CCAAGGTTTTCCTTTTCC_AAGGCCGG
34._RUQ_1588
_AACGTT___TT____CCAG
35._MARPER_28
CCAACCTT-AATT-CC-AAAG-GG
 1516171819202122232425262728
_Input profile
TTAAGGCCCCGGGGAACCAAGGGGCCCC
1._GC-01-101-5-18
TTAAGGCCCCGGGGAACCAAGGGGCCCC
2._NA_286
TTAAGGCCCCGGGGAACCAAGGGGCCCC
3._GC-01-101-5-18
TTAAGGCCCCGGGGAACCAAGGGGCCCC
4._RUQ_801
____CCGGGG_CCAAGGGGCCCC
5._RUQ_1587
____CCGGGG_CCAAGGGGCCCC
6._NA_286
TTAAGGCCCCGGGGAACCAAGGGGCCCC
7._RUQ_468
____CCGGGG_CCAAGGGGCTCC
8._RUQ_897
____CCGGGG_CCAAGGGGCTCC
9._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
10._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
11._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
12._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
13._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
14._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
15._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
16._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
17._MARPER_38
TTAAGG-CC-GGAACC-GG-CTCC
18._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
19._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
20._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
21._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
22._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
23._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
24._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
25._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
26._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
27._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
28._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
29._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
30._RUQ_877
____CCCGGG_CCAAGGGG-CC
31._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
32._POUND_25_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
33._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
34._RUQ_1588
____CCGGGG_CCAAGGGGTTCC
35._MARPER_28
TTAAGG-CC-GGAACC-GG-TTCC
 293031323334353637383940  
_Input profile
AAGGAACCAACCAACCGGCCTTGGX_XX_X
1._GC-01-101-5-18
AAGGAACCAACCAACCGGCCTTGGX_XX_X
2._NA_286
AAGGAACCAACCAACCGGCCTTGGX_XX_X
3._GC-01-101-5-18
AAGGAACCAACCAACCGGCCTTGGX_XX_X
4._RUQ_801
AA_AACCAACCAACCGGCC__X_XX_X
5._RUQ_1587
AA_AACCAACCAACCGGCC__X_XX_X
6._NA_286
AAGGAACCAACCAACCGGCCTTGGX_XX_X
7._RUQ_468
AA_AACCAACCAACCGGCC__X_XX_X
8._RUQ_897
AA_AACCAACCAACCGGCC__X_XX_X
9._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
10._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
11._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
12._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
13._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
14._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
15._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
16._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
17._MARPER_38
AAGG-CCAA---GG-TT-X_XX_X
18._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
19._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
20._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
21._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
22._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
23._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
24._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
25._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
26._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
27._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
28._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
29._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
30._RUQ_877
AA_AACCAACCAACCGGCC__X_XX_X
31._POUND_2_/A
AAGGAACCAA_AACCGGCCTTGGX_XX_X
32._POUND_25_/A
AAGGAACCAA_AACCGGCCTTGGX_XX_X
33._POUND_5_/C
AAGGAACCAG_AACCGGCCTTGGX_XX_X
34._RUQ_1588
AA_AACCAACCAACCGGCC__X_XX_X
35._MARPER_28
AAGG-CCAA---GG-TT-X_XX_X

Input profile: NA_286

 
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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

1._NA_286 GC-01-101-5-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._NA_286

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._NA_286 GC-01-101-5-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

4._NA_149 RUQ_801

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._NA_702 RUQ_1587

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._NA_286

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

7._NA_756 RUQ_468

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._CRU_70 RUQ_897

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._POUND_5_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._POUND_5_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

11._POUND_5_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

12._POUND_5_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

13._POUND_5_/C GC-08-165-4-08

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._POUND_5_/C GC-08-165-4-08

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._POUND_5_/C GC-08-165-4-08

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._POUND_5_/C GC-08-165-4-08

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._MARPER_38

94.2 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

18._POUND_2_/A

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._POUND_2_/A

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

20._POUND_2_/A

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

21._POUND_2_/A

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

22._POUND_2_/A

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

23._POUND_2_/A

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

24._POUND_2_/A GC-01-093-5-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

27._POUND_2_/A GC-01-093-5-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

28._POUND_2_/A GC-01-093-5-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

29._POUND_2_/A GC-01-093-5-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._CRU_100 RUQ_877

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._POUND_2_/A

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

32._POUND_25_/A

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

33._POUND_5_/C

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

34._NA_710 RUQ_1588

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._MARPER_28

90.4 %
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25